Software on the ilifu cluster

Everything below is available to ilifu users as a Lua module or a Singularity container. Sign in to search, see which versions are installed, read man pages, and request new software.

Radio astronomy 16 packages

atnfcat bbarolo calceph casa cfitsio pgplot psrcat psrdada psrxml pybdsf qd sigproc sofa splinter tempo tempo2

system 21 packages

cudnn fribidi gettext gfaffix gocryptfs harfbuzz homebrew hwloc jemalloc pmix squashfuse ubuntu-bionic ubuntu-bionic-compile ubuntu-focal ubuntu-focal-compile ubuntu-jammy ubuntu-jammy-compile ubuntu-noble ubuntu-noble-compile user_management user_tools

Bioinformatics 146 packages

ClinSV ClinSV_1.0.0 DIANN DIANN_1.8.1 DIANN_2.3.2 GenomeBrowser RSEM RStudio1.3.959-R4.0.0 alphafold alphafold_2.3.2 alphafold_latest ambertools annovar bamtools bcbio bcbio bcftools beast beast1.10.4 beast1.10.5 beast2 bedtools biobambam2 bismark blast bowtie2 bracken bwa canvas cd-hit chopper cnvkit cnvpytor cosigt cosigt_0.1.3 cutadapt dorado exomiser expansionhunter fastqc filtlong fragpipe gafpack gatk gatk_4.1.3.0 gatk_4.2.6.1 gemini gemma genomestrip gfainject gfastats glimpse hapgen2 hifiasm hisat2 htslib htstream hyphy impg impute5 indelible iqtree kallisto kraken2 lirical mafft manta mash mashmap mdanalysis medaka merqury meryl minimap2 mspipe mspipe.2.1 mtoolbox multiqc mummer muscle nanocomp nanofilt nanoplot nanostat nextflow panacus panpatch pggb pggb pggb.202410160258499fff88 phyml picard plink polypolish popdel popgen porechop proteowizard proteowizard_3.0.22167 prsice-2 pysam referenceseeker reviewer rfmix salmon samtools savvysuite seqkit seqtk seqwish shapeit5 snpEff snpdists snpsites snvstory snvstory spectronaut spectronaut.20.0 spectronaut.20.4 spliceai sratoolkit stacks star subread svanna treePL tribes tribes_0.2 trimgalore trimmomatic trycycler trycycler_biocontainers.0.5.4--pyhdfd78af_0 trycycler_staphb.0.5.4 varfish vcfbub vcftools vep vep vep.101.0 vep.105 verkko-fillet vg vip wfmash whatshap yacrd

Languages & compilers 44 packages

LAPACK R RStudio1.2.5042-R4.0.0 RStudio1.2.5042-R4.0.4 RStudio1.2.5042-R4.2.0 RStudio1.2.5042-R4.2.1 RStudio2022.12.0-353-R4.2.2 RStudio2023.06.1-524-R4.3.1 RStudio2023.06.1-524-R4.3.2 RStudio2023.06.1-524-R4.3.3 RStudio2023.06.1-524-R4.4.1 RStudio2025.05.1-513-R4.5.1 RStudio2026.07.1-147-R4.6.1 anaconda3 bionic-R3.6.3-RStudio1.2.5042-bio boost cmake cuda dotnet fftw go gromacs intel java julia latex libgsl mamba maven micromamba mono mpich nodejs openBLAS openmpi perl perlbrew python python-ml python-ml-0.0.1 python-ml-base-0.0.1 ruby rust rustup

ML & data science 1 packages

tensorflow

Workflow & utilities 16 packages

apptainer cromwell fzf git git-lfs githubcli gnuplot gnuplot graphviz miniwdl neovim ollama pandoc rclone singularity zstd

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